polychrom

latest

polychrom.simulation module
polychrom.polymerutils module
- Loading and saving individual conformations
polychrom.hdf5_format module
- New-style HDF5 trajectories
polychrom.polymer_analyses module
- Analyses of polymer conformations
  - Tools for calculating contacts
  - Tools to calculate P(s) and R(s)
polychrom.contactmaps module
- Building contact maps
polychrom.forces module
- Detailed description of forces in polychrom
  - Parametrization of bond forces
  - Note on energy equations

polychrom

polychrom.simulation module¶

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